PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00148099001
Common NameGSBRNA2T00148099001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 356aa    MW: 39560.4 Da    PI: 8.6279
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00148099001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1071.1e-333488155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  GSBRNA2T00148099001 34 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
                         79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8013191IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-323189IPR009057Homeodomain-like
SuperFamilySSF466891.76E-163389IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-233489IPR006447Myb domain, plants
PfamPF002492.6E-83686IPR001005SANT/Myb domain
PfamPF143792.0E-21129169IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MFHAKKPSSM NGSYENRAMC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VAQLGGPDKA  60
TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEYGDQS TKEGSRASAM DIQRNIASSS  120
GMISRNMNEM QMEVQRRLHE QLEVQRHLQL RIEAQGKYMQ TILERACQTL AGENMAAAAA  180
AGGGYKTNLG STSLSAAVGP QPHPLSFPPF QDLNIYGNTT EQVLDQHNFH HQNIENHYTA  240
NNAADTNIYL GKKRPNPSYG NDIRKELLMW SDQDHDLSGN QAIDDEHRIQ IQMATHVSTD  300
LDSLSEIYER KSGLSGDEGN NGGKFLERPS PRRSPLSPMM NPNSGLIQGR NSPFG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.217131e-65leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00148099001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167190.0AK316719.1 Arabidopsis thaliana AT1G79430 mRNA, complete cds, clone: RAFL09-57-C07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589860.10.0PREDICTED: myb family transcription factor APL
SwissprotQ9SAK50.0APL_ARATH; Myb family transcription factor APL
TrEMBLA0A078DH260.0A0A078DH26_BRANA; BnaC06g39850D protein
TrEMBLA0A0D3D1U40.0A0A0D3D1U4_BRAOL; Uncharacterized protein
STRINGBra035118.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50442750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.20.0G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]